Höllt's Publications with Computer Graphics and Visualization

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Publications in 2024
SVCHEH24
Accelerating hyperbolic t-SNE   hypertSNE.pdf
Martin Skrodzki, Hunter van Geffen, Nicolas Chaves de Plaza, Thomas Höllt, Elmar Eisemann, Klaus Hildebrandt
IEEE Transactions on Visualization and Computer Graphics - 2024
VKTLEBEVHL24
ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data   presentation.pptx paper.pdf
Alexander Vieth, Thomas Kroes, Julian Thijssen, Baldur van Lew, Jeroen Eggermont, Soumyadeep Basu, Elmar Eisemann, Anna Vilanova, Thomas Höllt, Boudewijn P.F. Lelieveldt
IEEE Transactions on Visualization and Computer Graphics, Volume 30, Number 2 - 2024
 
Publications in 2023
JSESCKYCLSTBBBCDEGGKMPRSSTTFHHKLMLSSWDGLHB23
Comparative transcriptomics reveals human-specific cortical features   science.ade9516 summary.pdf science.ade9516.pdf
Nicholas L. Jorstad, Janet H. T. Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Fenna M. Krienen, Anna Marie Yanny, Jennie Close, Brian Long, Stephanie C. Seeman, Kyle J. Travaglini, Soumyadeep Basu, Marc Beaudin, Darren Bertagnolli, Megan Crow, Song-Lin Ding, Jeroen Eggermont, Alexandra Glandon, Jeff Goldy, Thomas Kroes, Delissa McMillen, Thanh Pham, Christine Rimorin, Kimberly Siletti, Saroja Somasundaram, Michael Tieu, Amy Torkelson, Guoping Feng, Guoping Hopkins, Thomas Höllt, Dirk Keene, Sten Linnarsson, Steven A. McCarroll, Boudewijn P.F. Lelieveldt, Chet C. Sherwood, Kimberly Smith, Christopher A. Walsh, Alexander Dobin, Jesse Gillis, Ed Lein, Rebecca Hodge, Trygve Bakken
Science, Volume 382, page eade9516 - 2023
BEKJBLLH23
Cytosplore Simian Viewer: Visual Exploration for Multi-Species Single-Cell RNA Sequencing Data   paper.pdf VCBMPresentationSimianViewer.pdf
Soumyadeep Basu, Jeroen Eggermont, Thomas Kroes, Nicholas L. Jorstad, Trygve Bakken, Ed Lein, Boudewijn P.F. Lelieveldt, Thomas Höllt
Eurographics Workshop on Visual Computing for Biology and Medicine, page 111-120 - Sep 2023
VLEVH23
Interactions for Seamlessly Coupled Exploration of High-Dimensional Images and Hierarchical Embeddings   presentation.pptx paper.pdf paper_supplement.pdf presentation.pdf
Alexander Vieth, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova, Thomas Höllt
Vision, Modeling, and Visualization - 2023
LTKDAHL23
SpaceWalker enables interactive gradient exploration for spatial transcriptomics data   2023_spacewalker.pdf
Chang Li, Julian Thijssen, Thomas Kroes, Mitchell de Boer, Tamim Abdelaal, Thomas Höllt, Boudewijn P.F. Lelieveldt
Cell Reports Methods - 2023
 
Publications in 2022
KSKVHV22
Co-expression patterns of microglia markers Iba1, TMEM119 and P2RY12 in Alzheimers disease   2022_neurobiology_of_disease.pdf
Boyd Kenkhuis, Antonios Somarakis, Lynn R.T. Kleindouwel, Willeke M. C. van Roon-Mom, Thomas Höllt, Louise van der Weerd
Neurobiology of Disease, Volume 167, page 105684 - 2022
VVLEH22
Incorporating Texture Information into Dimensionality Reduction for High-Dimensional Images   Vieth_PacificVis_2022_slides.pptx Vieth_PacificVis_2022_preprint.pdf Vieth_PacificVis_2022_preprint_supplement.pdf Vieth_PacificVis_2022_preprint_supplement_figures345.pdf Vieth_PacificVis_2022_slides.pdf
Alexander Vieth, Anna Vilanova, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Thomas Höllt
2022 15th IEEE Pacific Visualization Symposium (PacificVis), page 11-20 - 2022
ASSCISHFTEMWMV22
Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival   2022_immuno_therapy_cancer.pdf 2022_immuno_therapy_cancer_supplemental.pdf
Ziena Abdulrahman, Saskia J Santegoets, Gregor Sturm, Pornpimol Charoentong, Marieke E Ijsselsteijn, Antonios Somarakis, Thomas Höllt, Francesca Finotello, Zlatko Trajanoski, Sylvia I. van Egmond, Dana A. M. Mustafa, Marij J P Welters, Noel de Miranda, Sjoerd H. van der Burg
Journal for ImmunoTherapy of Cancer , Number 2, page e004346 - 2022
PGKKALEH22
Visual Analysis of RIS Data for Endmember Selection   Popa-GCH-2022.pdf
Andra Popa, Francesca Gabrieli, Thomas Kroes, Anna Krekeler, Matthias Alfeld, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Thomas Höllt
Eurographics Workshop on Graphics and Cultural Heritage - 2022
 
Publications in 2021
SHV21a
A Progressive Approach for Uncertainty Visualization in Diffusion Tensor Imaging   presentation.ppt EuroVis2020_preprint.pdf
Faizan Siddiqui, Thomas Höllt, Anna Vilanova
Computer Graphics Forum (Proc. EuroVis 2021), Volume 40, Number 3 - 2021
BJHLTKCHKSEYAABBCCCDDDDDDDFFGGGHHKKLLLLLMMMMNOOPPPPRRRRSSSSTTTWXYZACCDGHHHHKKKLLMPRRSSSWKHTMMTZZFELL21
Comparative cellular analysis of motor cortex in human, marmoset and mouse   2020_cellular_diversity_evolution.pdf
Trygve Bakken, Nicholas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, Megan Crow, Rebecca Hodge, Fenna M. Krienen, Staci A. Sorensen, Jeroen Eggermont, Zizhen Yao, Brian Aevermann, Andrew I. Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa G. Castanon, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Nick Dee, Nikolai Dembrow, Dinh Diep, Song-Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas Graybuck, Brian R. Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S. Liu, Hanqing Liu, Anup Mahurkar, Delissa McMillen, Jeremy Miller, Marmar Moussa, Joseph R. Nery, Joshua Orvis, Scott Owen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Olivier Poirion, Nora M. Reed, Christine Rimorin, Angeline Rivkin, William J. Romanow, Adriana E. Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Renee Zhang, Seth A. Ament, Hector Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R. Hof, Thomas Höllt, Gregory D. Horwitz, Dirk Keene, Peter V. Kharchenko, Andrew Ko, Boudewijn P.F. Lelieveldt, Chongyuan Luo, Eran A. Mukamel, Sebastian Preissl, Aviv Regev, Bing Ren, Richard Scheuermann, Kimberly Smith, William J. Spain, Owen R. White, Christof Koch, Michael Hawrylycz, Bosiljka Tasic, Evan Z. Macosko, Steven A. McCarroll, Jonathan T. Ting, Hongkui Zeng, Kun Zhang, Guoping Feng, Joseph R. Ecker, Sten Linnarsson, Ed Lein
Nature, Volume 598, page 111-119 - 2021
SUKLH21a
ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass Cytometry Data   2019_imacyte.pdf
Antonios Somarakis, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Thomas Höllt
IEEE Transactions on Visualization and Computer Graphics, Volume 27, Number 1, page 98--110 - 2021
OWNBHG21
InCorr: Interactive Data-Driven Correlation Panels for Digital Outcrop Analysis   2020_vis_incorr.pdf
Thomas Ortner, Andreas Walch, Rebecca Nowak, Robert Barnes, Thomas Höllt, Meister Eduard Groeller
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2020), Volume 27, Number 1 - 2021
DUMSGJHPMOLKAKVELRKRFHKKMLY21
Systems analysis and controlled malaria infection in Europeans and Africans elucidate naturally acquired immunity   s41590-021-00911-7.pdf
Sanne E. de Jong, Vincent van Unen, Mikhael D. Manurung , Koen Stam, Jelle J. Goeman, Simon P. Jochems, Thomas Höllt, Nicola Pezzotti, Yoanne D. Mouwenda , Madeleine Eunice Betouke Ongwe, Freia-Raphaella Lorenz, Yvonne C. M. Kruize, Shohreh Azimi, Marion König, Anna Vilanova, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Meta Roestenberg, B. Kim Lee Sim, Marcel Reinders, Rolf Fendel, Stephen L. Hoffman, Peter G. Kremsner, Frits Koning, Benjamin Mordmüller, Bertrand Lell, Maria Yazdanbakhsh
Nature Immunology, Volume 22, Number 5, page 654-665 - 2021
SHV21
Uncertainty in the DTI Visualization Pipeline   Uncertainty_in_DTI.pdf
Faizan Siddiqui, Thomas Höllt, Anna Vilanova
Springer, page 125--148 - February 2021
SILKMLH21
Visual Cohort Comparison for Spatial Single-Cell Omics-Data   2020_vis_cohort.pdf
Antonios Somarakis, Marieke E Ijsselsteijn, Sietse J Luk, Boyd Kenkhuis, Noel de Miranda, Boudewijn P.F. Lelieveldt, Thomas Höllt
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2020), Volume 27, Number 1 - 2021
 
Publications in 2020
AEHMRL20
Cytosplore-Transcriptomics: a Scalable Interactive Framework for Single-Cell RNA Sequencing Data Analysis   2020_cyto_transcriptomics.pdf
Tamim Abdelaal, Jeroen Eggermont, Thomas Höllt, Ahmed Mahfouz, Marcel Reinders, Boudewijn P.F. Lelieveldt
bioRxiv - 2020
PTMHLLEV20
GPGPU Linear Complexity t-SNE Optimization   2019_vis_GPUtSNE.pdf
Nicola Pezzotti, Julian Thijssen, Alexander Mordvintsev, Thomas Höllt, Baldur van Lew, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2019), Volume 26, Number 1, page 1172--1181 - 2020
DJTSKULHMLKSSSY20
Helminth Infections Drive Heterogeneity in Human Type 2 and Regulatory Cells   Ruiter_STM_repository.pdf
Karin de Ruiter, Simon P. Jochems, Dicky L. Tahapary, Koen Stam, Marion König, Vincent van Unen, Sandra Laban, Thomas Höllt, Moustapha Mbow, Boudewijn P.F. Lelieveldt, Frits Koning, Erliyani Sartono, Johannes W. A. Smit, Taniawati Supali, Maria Yazdanbakhsh
Science Translational Medicine, Volume 12, Number 524, page eaaw3703 - 2020

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