Thomas Höllt

thomas

Assistant Professor for Visualization at Leiden Computational Biology Center at LUMC
Visiting Researcher at Computer Graphics and Visualization group at TU Delft
Room E6.200, Building 28
E-mail: T.Hollt-1@tudelft.nl
Website: http://www.thomashollt.com

Research

My main research is on the visual analysis of high dimensional data with a strong focus on the Cytosplore project. Cytosplore is a framework for visual analysis of single cell data acquired using Mass Cytometry. The data consists of high dimensional expression data for single cells taken through blood- or tissue samples.

Previously I worked on visualization of ensemble data and uncertainty, mostly for ocean forecasts, but also in other geological and geophysical applications. I developed Ovis, a framework for visual analysis of ocean forecasts.

Available Master Thesis Projects

We have open projects within the Cytosplore project including a project on classification of cellular expression data through dimensionality reduction. If you’re interested in working with me on this or other projects involving biological visualisation for your master thesis project, please contact me directly, or Dr. A. Vilanova to discuss the possibilities.

Recent Publications

Publications in 2020
Nicola Pezzotti, Julian Thijssen, Alexander Mordvintsev, Thomas Höllt, Baldur van Lew, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2019), Volume 26, Number 1 - 2020
 
Publications in 2019
Rebecca Hodge, Trygve Bakken, Jeremy Miller, Kimberly Smith, Eliza Barkan, Lucas Graybuck, Jennie Close, Brian Long, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz Levi, Soraya Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder Gwinn, Daniel Hirschstein, Dirk Keene, Mohamed Keshk, Andrew Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot Thomsen, Michael Tieu, Richard Scheuermann, Rafael Yuste, Susan Sunkin, Boudewijn P.F. Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John Phillips, Bosiljka Tasic, Hongkui Zeng, Allan Jones, Christof Koch, Ed Lein
Nature - 2019

Tamim Abdelaal, Thomas Höllt, Vincent van Unen, Boudewijn P.F. Lelieveldt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Bioinformatics, Volume btz180 - 2019

Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Na Li, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize) - 2019

Thomas Höllt, Anna Vilanova, Nicola Pezzotti, Boudewijn P.F. Lelieveldt, Helwig Hauser
Computer Graphics Forum (Proceedings of Eurographics 2019), Volume 38, Number 3 - 2019

Antonios Somarakis, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Thomas Höllt
IEEE Transactions on Visualization and Computer Graphics - 2019

Na Li, Vincent van Unen, Tamim Abdelaal, Nannan Guo, Sofya Kasatskaya, Kristin Ladell, James McLaren, Evgeniy Egorov, Mark Izraelson, Susana M. Chuva de Sousa Lopes, Thomas Höllt, Olga Britanova, Jeroen Eggermont, Noel de Miranda, Dmitriy Chudakov, David Price, Boudewijn P.F. Lelieveldt, Frits Koning
Nature Immunology, Volume 20, Number 3, page 301--312 - 2019

Guillaume Beyrend, Esmé T.I. van der Gracht , Ayse Yilmaz, Suzanne van Duikeren, Marcel Camps, Thomas Höllt, Anna Vilanova, Vincent van Unen, Frits Koning, Noel de Miranda, Ramon Arens, Ferry Ossendorp
Journal for ImmunoTherapy of Cancer, Volume 7, Number 217 - 2019

Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Cytometry Part A - 2019

Saskia J Santegoets, Vanessa J van Ham, Ilina Ehsan, Pornpimol Charoentong, Chantal L Duurland, Vincent van Unen, Thomas Höllt, Lilly-Ann van der Velden, Sylvia I. van Egmond, Kim Kortekaas, Peggy J de Vos van Steenwijk, Mariette IE van Poelgeest , Marij J P Welters, Sjoerd H van der Burg
Clinical Cancer Research, Volume 25, Number 1 - jan 2019