Thomas Höllt

Van Mourik Broekmanweg 6
Room E. 6.160 Building 28
Phone: +31 15 27 83107
E-mail: T.Hollt-1@tudelft.nl
Website: http://www.thomashollt.com

My main research is on the visual analysis of high dimensional data with a focus on the Cytosplore project. Cytosplore is a framework for visual analysis of single cell data acquired using Mass Cytometry. The data consists of high dimensional expression data for single cells taken through blood- or tissue samples.
Previously I worked on visualization of ensemble data and uncertainty, mostly for ocean forecasts, but also in other geological and geophysical applications. I developed Ovis, a framework for visual analysis of ocean forecasts.

Available Master Thesis Projects

We have open projects within the Cytosplore project including a project on classification of cellular expression data through dimensionality reduction. If you’re interested in working with me on this or other projects involving biological visualization for your master thesis project, please contact me directly.

Recent Publications

Publications in 2020
Nicola Pezzotti, Julian Thijssen, Alexander Mordvintsev, Thomas Höllt, Baldur van Lew, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2019), Volume 26, Number 1 - 2020

Karin de Ruiter, Simon P. Jochems, Dicky L. Tahapary, Koen Stam, Marion König, Vincent van Unen, Sandra Laban, Thomas Höllt, Moustapha Mbow, Boudewijn P.F. Lelieveldt, Frits Koning, Erliyani Sartono, Johannes W. A. Smit, Taniawati Supali, Maria Yazdanbakhsh
Science Translational Medicine, Volume 12, Number 524, page eaaw3703 - 2020
 
Publications in 2019
Rebecca Hodge, Trygve Bakken, Jeremy Miller, Kimberly Smith, Eliza Barkan, Lucas Graybuck, Jennie Close, Brian Long, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz Levi, Soraya Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder Gwinn, Daniel Hirschstein, Dirk Keene, Mohamed Keshk, Andrew Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot Thomsen, Michael Tieu, Richard Scheuermann, Rafael Yuste, Susan Sunkin, Boudewijn P.F. Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John Phillips, Bosiljka Tasic, Hongkui Zeng, Allan Jones, Christof Koch, Ed Lein
Nature - 2019

Tamim Abdelaal, Thomas Höllt, Vincent van Unen, Boudewijn P.F. Lelieveldt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Bioinformatics, Volume btz180 - 2019

Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Na Li, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize) - 2019

Thomas Höllt, Anna Vilanova, Nicola Pezzotti, Boudewijn P.F. Lelieveldt, Helwig Hauser
Computer Graphics Forum (Proceedings of Eurographics 2019), Volume 38, Number 3 - 2019

Andrea Cossarizza, Hyun Dong Chang, Andreas Radbruch, Thomas Höllt
European Journal of Immunology, Volume 49, Number 10, page 1457--1973 - 2019

Antonios Somarakis, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Thomas Höllt
IEEE Transactions on Visualization and Computer Graphics - 2019

Na Li, Vincent van Unen, Tamim Abdelaal, Nannan Guo, Sofya Kasatskaya, Kristin Ladell, James McLaren, Evgeniy Egorov, Mark Izraelson, Susana M. Chuva de Sousa Lopes, Thomas Höllt, Olga Britanova, Jeroen Eggermont, Noel de Miranda, Dmitriy Chudakov, David Price, Boudewijn P.F. Lelieveldt, Frits Koning
Nature Immunology, Volume 20, Number 3, page 301--312 - 2019

Jessica S. Suwandi, Sandra Laban, Kincso Vass, Antoinette Joosten, Vincent van Unen, Boudewijn P.F. Lelieveldt, Thomas Höllt, Jaap Jan Zwaginga, Tatjana Nikolic, Bart O. Roep
Journal of Autoimmunity, Volume 2, page 102361 - 2019

Guillaume Beyrend, Esmé T.I. van der Gracht , Ayse Yilmaz, Suzanne van Duikeren, Marcel Camps, Thomas Höllt, Anna Vilanova, Vincent van Unen, Frits Koning, Noel de Miranda, Ramon Arens, Ferry Ossendorp
Journal for ImmunoTherapy of Cancer, Volume 7, Number 217 - 2019

Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Cytometry Part A - 2019

Saskia J Santegoets, Vanessa J van Ham, Ilina Ehsan, Pornpimol Charoentong, Chantal L Duurland, Vincent van Unen, Thomas Höllt, Lilly-Ann van der Velden, Sylvia I. van Egmond, Kim Kortekaas, Peggy J de Vos van Steenwijk, Mariette IE van Poelgeest , Marij J P Welters, Sjoerd H van der Burg
Clinical Cancer Research, Volume 25, Number 1 - jan 2019
 
Publications in 2018
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of Information Visualization 2017), Volume 24, Number 1 - jan 2018

Guillaume Beyrend, Koen Stam, Thomas Höllt, Ferry Ossendorp, Ramon Arens
Computational and Structural Biotechnology Journal, Volume 16, page 435--442 - 2018

Nicola Pezzotti, Thomas Höllt, Jan van Gemert, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2017), Volume 24, Number 1 - 2018

Sandra Laban, Jessica S. Suwandi, Vincent van Unen, Jos Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P.F. Lelieveldt, Bart O. Roep
PLoS ONE, Volume 13, Number 8, page e0200818 - aug 2018


Na Li, Vincent van Unen, Thomas Höllt, Allan Thompson, Jeroen van Bergen, Nicola Pezzotti, Elmar Eisemann, Anna Vilanova, Susana M. Chuva de Sousa Lopes, Boudewijn P.F. Lelieveldt, Frits Koning
Journal of Experimental Medicine, Volume 215, Number 3 - 2018

Computer Graphics Forum (Proc. of EuroVis), Volume 37, Number 3 - 2018

Anke Redeker, Ester Remmerswaal, Esmé T.I. van der Gracht , Suzanne Welten, Thomas Höllt, Frits Koning, Janko Nikolich-Žugich, Ineke ten Berge, René van Lier, Vincent van Unen, Ramon Arens
Frontiers in Immunology, Volume 8, Number 1953 - 2018
 
Publications in 2017
IEEE Transactions on Visualization and Computer Graphics, Volume 23, Number 7, page 1739--1752 - july 2017



Computer Graphics Forum (Proc. EuroVis 2017), Volume 36, Number 3, page 121--132 - 2017

Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel Reinders, Elmar Eisemann, Anna Vilanova, Frits Koning, Boudewijn P.F. Lelieveldt
Nature Communications, Volume 8, Number 1740, page 1--10 - 2017
 
Publications in 2016
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Computer Graphics Forum (Proc. of EuroVis), Volume 35, Number 3, page 171--180 - june 2016

Computer Graphics Forum (Proc. of EuroVis), Volume 35, Number 3, page 21--30 - june 2016

Vincent van Unen, Na Li, Ilse Molendijk, Temurhan Mine, Thomas Höllt, Andrea E van der Meulen-de Jong, Hein W Verspaget, M Luisa Mearin, Chris J Mulder, Jeroen van Bergen, Boudewijn P.F. Lelieveldt, Frits Koning
Immunity, Volume 44, Number 5, page 1227--1239 - may 2016

Thomas Höllt, Fabio Miguel de Matos Ravanelli, Markus Hadwiger, Ibrahim Hoteit
Workshop on Visualisation in Environmental Sciences (EnvirVis), page 1--4 - 2016