Assistant Professor for Visualization at Leiden Computational Biology Center at LUMC
Visiting Researcher at Computer Graphics and Visualization group at TU Delft
Room E6.200, Building 28
E-mail: T.Hollt-1@tudelft.nl
Website: http://www.thomashollt.com
Research
My main research is on the visual analysis of high dimensional data with a strong focus on the Cytosplore project. Cytosplore is a framework for visual analysis of single cell data acquired using Mass Cytometry. The data consists of high dimensional expression data for single cells taken through blood- or tissue samples.
Previously I worked on visualization of ensemble data and uncertainty, mostly for ocean forecasts, but also in other geological and geophysical applications. I developed Ovis, a framework for visual analysis of ocean forecasts.
Available Master Thesis Projects
We have open projects within the Cytosplore project including a project on classification of cellular expression data through dimensionality reduction. If you’re interested in working with me on this or other projects involving biological visualisation for your master thesis project, please contact me directly, or Dr. A. Vilanova to discuss the possibilities.
Recent Publications
Publications in 2019
Bioinformatics, Volume btz180 - 2019
Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize) - 2019
Computer Graphics Forum (Proceedings of Eurographics 2019), Volume 38, Number 3 - 2019
Na Li,
Vincent van Unen,
Tamim Abdelaal,
Nannan Guo,
Sofya Kasatskaya,
Kristin Ladell,
James McLaren,
Evgeniy Egorov,
Mark Izraelson,
Susana M. Chuva de Sousa Lopes,
Thomas Höllt,
Olga Britanova,
Jeroen Eggermont,
Noel de Miranda,
Dmitriy Chudakov,
David Price,
Boudewijn P.F. Lelieveldt,
Frits Koning
Nature Immunology, Volume 20, Number 3, page 301--312 - 2019
Saskia J Santegoets,
Vanessa J van Ham,
Ilina Ehsan,
Pornpimol Charoentong,
Chantal L Duurland,
Vincent van Unen,
Thomas Höllt,
Lilly-Ann van der Velden,
Sylvia I van Egmond,
Kim Kortekaas,
Peggy J de Vos van Steenwijk,
Mariette IE van Poelgeest ,
Marij J P Welters,
Sjoerd H van der Burg
Clinical Cancer Research, Volume 25, Number 1 - jan 2019
Publications in 2018
IEEE Transactions on Visualization and Computer Graphics (Proceedings of Information Visualization 2017), Volume 24, Number 1 - jan 2018
Guillaume Beyrend,
Koen Stam,
Thomas Höllt,
Ferry Ossendorp,
Ramon Arens
Computational and Structural Biotechnology Journal, Volume 16, page 435--442 - 2018
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2017), Volume 24, Number 1 - 2018
PLoS ONE, Volume 13, Number 8, page e0200818 - aug 2018
