Höllt's Publications with Computer Graphics and Visualization

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Publications in 2020
DUASMPHLK20
High-Dimensional Cytometric Analysis of Colorectal Cancer Reveals Novel Mediators of Antitumour Immunity   2019_gut_antitumor.pdf 2019_gut_antitumor_suppfigures.pdf 2019_gut_antitumor_suppmethods.pdf 2019_gut_antitumor_supptable.pdf
Natasja L de Vries, Vincent van Unen, Tamim Abdelaal, Arantza Sarasqueta, Ahmed Mahfouz, Koen C M J Peeters, Thomas Höllt, Boudewijn P.F. Lelieveldt, Frits Koning
Gut, Volume 69, page 691 -- 703 - 2020
SLVJULHZNR20
Multidimensional Analyses of Proinsulin Peptide-specific Regulatory T Cells Induced by Tolerogenic Dendritic Cells   2019_JofAutoimmunity.pdf 2019_JofAutoimmunity_supplemental.pdf
Jessica S. Suwandi, Sandra Laban, Kincso Vass, Antoinette Joosten, Vincent van Unen, Boudewijn P.F. Lelieveldt, Thomas Höllt, Jaap Jan Zwaginga, Tatjana Nikolic, Bart O. Roep
Journal of Autoimmunity, Volume 107, page 102361 - 2020
ISLHM20
Semi-Automated Background Removal Limits Loss of Data and Normalises the Images for Downstream Analysis of Imaging Mass Cytometry Data   2020_background_removal.pdf
Marieke E Ijsselsteijn, Antonios Somarakis, Boudewijn P.F. Lelieveldt, Thomas Höllt, Noel de Miranda
bioRxiv - 2020
 
Publications in 2019
HBMSBGCLPYEHLSABBBCCDDDEFGGGHK
Conserved Cell Types with Divergent Features Between Human and Mouse Cortex   384826.full.pdf
Rebecca Hodge, Trygve Bakken, Jeremy Miller, Kimberly Smith, Eliza Barkan, Lucas Graybuck, Jennie Close, Brian Long, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz Levi, Soraya Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder Gwinn, Daniel Hirschstein, Dirk Keene, Mohamed Keshk, Andrew Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot Thomsen, Michael Tieu, Richard Scheuermann, Rafael Yuste, Susan Sunkin, Boudewijn P.F. Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John Phillips, Bosiljka Tasic, Hongkui Zeng, Allan Jones, Christof Koch, Ed Lein
Nature, Volume 573, page 61--68 - 2019
AHVLKRM19
CyTOFmerge: Integrating mass cytometry data across multiple panels   2019_cytofmerge.pdf 2019_cytofmerge_supplemental.pdf
Tamim Abdelaal, Thomas Höllt, Vincent van Unen, Boudewijn P.F. Lelieveldt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Bioinformatics, Volume btz180 - 2019
HPULKELV19
Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System   2019_dirk_bartz_prize.pdf 2019_dirk_bartz_prize_slides.pdf
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Na Li, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize) - 2019
HVPLH19
Focus+Context Exploration of Hierarchical Embeddings   2019_eurovis.pdf 2019_eurovis_slides.pdf
Thomas Höllt, Anna Vilanova, Nicola Pezzotti, Boudewijn P.F. Lelieveldt, Helwig Hauser
Computer Graphics Forum (Proceedings of Eurographics 2019), Volume 38, Number 3, page 569--579 - 2019
CCRHA19
Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)   2019_cytometry_guidelines.pdf
Andrea Cossarizza, Hyun Dong Chang, Andreas Radbruch, Thomas Höllt
European Journal of Immunology, Volume 49, Number 10, page 1457--1973 - 2019
LUAGKLMEICHBEMCPLK19
Memory CD4+ T Cells are Generated in the Human Fetal Intestine   Li-2019-Memory-cd-t-cells-are-generated-in-.pdf
Na Li, Vincent van Unen, Tamim Abdelaal, Nannan Guo, Sofya Kasatskaya, Kristin Ladell, James McLaren, Evgeniy Egorov, Mark Izraelson, Susana M. Chuva de Sousa Lopes, Thomas Höllt, Olga Britanova, Jeroen Eggermont, Noel de Miranda, Dmitriy Chudakov, David Price, Boudewijn P.F. Lelieveldt, Frits Koning
Nature Immunology, Volume 20, Number 3, page 301--312 - 2019
BGYVCHVUKMAO19
PD-L1 blockade engages tumor-infiltrating lymphocytes to co-express targetable activating and inhibitory receptors   paper.pdf
Guillaume Beyrend, Esmé T.I. van der Gracht , Ayse Yilmaz, Suzanne van Duikeren, Marcel Camps, Thomas Höllt, Anna Vilanova, Vincent van Unen, Frits Koning, Noel de Miranda, Ramon Arens, Ferry Ossendorp
Journal for ImmunoTherapy of Cancer, Volume 7, Number 217 - 2019
AVHKRM19
Predicting cell types in single cell mass cytometry data   2019_cytofclass.pdf
Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Cytometry Part A - 2019
SVECDVHVVKDVWV19
The Anatomical Location Shapes the Immune Infiltrate in Tumors of Same Etiology and Impacts Survival   2018_clinical_cancer_research.pdf
Saskia J Santegoets, Vanessa J van Ham, Ilina Ehsan, Pornpimol Charoentong, Chantal L Duurland, Vincent van Unen, Thomas Höllt, Lilly-Ann van der Velden, Sylvia I. van Egmond, Kim Kortekaas, Peggy J de Vos van Steenwijk, Mariette IE van Poelgeest , Marij J P Welters, Sjoerd H. van der Burg
Clinical Cancer Research, Volume 25, Number 1 - jan 2019
 
Publications in 2018
HPVKLV18
CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis   2017_vis_cyteguide_slides.pdf vis2017_hollt_cyteguide.pdf
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of Information Visualization 2017), Volume 24, Number 1 - jan 2018
BSHOA18
Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations   2018_cytofast.pdf 2018_cytofast_supplemental.pdf
Guillaume Beyrend, Koen Stam, Thomas Höllt, Ferry Ossendorp, Ramon Arens
Computational and Structural Biotechnology Journal, Volume 16, page 435--442 - 2018
PHVLEV18
DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks   paper216.pdf
Nicola Pezzotti, Thomas Höllt, Jan van Gemert, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of VAST 2017), Volume 24, Number 1 - 2018
LSVPWHPVLR18
Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus   2018_plos_circulating_t_cells.pdf
Sandra Laban, Jessica S. Suwandi, Vincent van Unen, Jos Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P.F. Lelieveldt, Bart O. Roep
PLoS ONE, Volume 13, Number 8, page e0200818 - aug 2018
APHDVML18
Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution   pdf.pdf
Walid M. Abdelmoula, Nicola Pezzotti, Thomas Höllt, J. Dijkstra, Anna Vilanova, Liam A. McDonnell, Boudewijn P.F. Lelieveldt
Journal of Proteome - feb. 2018
LVHTVPEVCLK18
Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine   jem.20171934.full.pdf
Na Li, Vincent van Unen, Thomas Höllt, Allan Thompson, Jeroen van Bergen, Nicola Pezzotti, Elmar Eisemann, Anna Vilanova, Susana M. Chuva de Sousa Lopes, Boudewijn P.F. Lelieveldt, Frits Koning
Journal of Experimental Medicine, Volume 215, Number 3 - 2018
PFHLEV18
Multiscale Visualization and Exploration of Large Bipartite Graphs   waow-hal.pdf
Nicola Pezzotti, Jean-Daniel Fekete, Thomas Höllt, Boudewijn P.F. Lelieveldt, Elmar Eisemann, Anna Vilanova
Computer Graphics Forum (Proc. of EuroVis), Volume 37, Number 3 - 2018
RRVWHKNTVVA18
The contribution of cytomegalovirus infection to immune senescence is set by the infectious dose   fimmu-08-01953.pdf
Anke Redeker, Ester Remmerswaal, Esmé T.I. van der Gracht , Suzanne Welten, Thomas Höllt, Frits Koning, Janko Nikolich-Žugich, Ineke ten Berge, René van Lier, Vincent van Unen, Ramon Arens
Frontiers in Immunology, Volume 8, Number 1953 - 2018

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