Koning's Publications with Computer Graphics and Visualization

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Publications in 2021
SUKLH21a
ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass Cytometry Data   2019_imacyte.pdf
Antonios Somarakis, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Thomas Höllt
IEEE Transactions on Visualization and Computer Graphics, Volume 27, Number 1, page 98--110 - 2021
DUMSGJHPMOLKAKVELRKRFHKKMLY21
Systems analysis and controlled malaria infection in Europeans and Africans elucidate naturally acquired immunity   s41590-021-00911-7.pdf
Sanne E. de Jong, Vincent van Unen, Mikhael D. Manurung , Koen Stam, Jelle J. Goeman, Simon P. Jochems, Thomas Höllt, Nicola Pezzotti, Yoanne D. Mouwenda , Madeleine Eunice Betouke Ongwe, Freia-Raphaella Lorenz, Yvonne C. M. Kruize, Shohreh Azimi, Marion König, Anna Vilanova, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Meta Roestenberg, B. Kim Lee Sim, Marcel Reinders, Rolf Fendel, Stephen L. Hoffman, Peter G. Kremsner, Frits Koning, Benjamin Mordmüller, Bertrand Lell, Maria Yazdanbakhsh
Nature Immunology, Volume 22, Number 5, page 654-665 - 2021
 
Publications in 2020
DJTSKULHMLKSSSY20
Helminth Infections Drive Heterogeneity in Human Type 2 and Regulatory Cells   Ruiter_STM_repository.pdf
Karin de Ruiter, Simon P. Jochems, Dicky L. Tahapary, Koen Stam, Marion König, Vincent van Unen, Sandra Laban, Thomas Höllt, Moustapha Mbow, Boudewijn P.F. Lelieveldt, Frits Koning, Erliyani Sartono, Johannes W. A. Smit, Taniawati Supali, Maria Yazdanbakhsh
Science Translational Medicine, Volume 12, Number 524, page eaaw3703 - 2020
DUASMPHLK20
High-Dimensional Cytometric Analysis of Colorectal Cancer Reveals Novel Mediators of Antitumour Immunity   2019_gut_antitumor.pdf 2019_gut_antitumor_suppfigures.pdf 2019_gut_antitumor_suppmethods.pdf 2019_gut_antitumor_supptable.pdf
Natasja L de Vries, Vincent van Unen, Tamim Abdelaal, Arantza Sarasqueta, Ahmed Mahfouz, Koen C M J Peeters, Thomas Höllt, Boudewijn P.F. Lelieveldt, Frits Koning
Gut, Volume 69, page 691 -- 703 - 2020
 
Publications in 2019
AHVLKRM19
CyTOFmerge: Integrating mass cytometry data across multiple panels   2019_cytofmerge.pdf 2019_cytofmerge_supplemental.pdf
Tamim Abdelaal, Thomas Höllt, Vincent van Unen, Boudewijn P.F. Lelieveldt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Bioinformatics, Volume btz180 - 2019
HPULKELV19
Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System   2019_dirk_bartz_prize.pdf 2019_dirk_bartz_prize_slides.pdf
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Na Li, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize) - 2019
LUAGKLMEICHBEMCPLK19
Memory CD4+ T Cells are Generated in the Human Fetal Intestine   Li-2019-Memory-cd-t-cells-are-generated-in-.pdf
Na Li, Vincent van Unen, Tamim Abdelaal, Nannan Guo, Sofya Kasatskaya, Kristin Ladell, James McLaren, Evgeniy Egorov, Mark Izraelson, Susana M. Chuva de Sousa Lopes, Thomas Höllt, Olga Britanova, Jeroen Eggermont, Noel de Miranda, Dmitriy Chudakov, David Price, Boudewijn P.F. Lelieveldt, Frits Koning
Nature Immunology, Volume 20, Number 3, page 301--312 - 2019
BGYVCHVUKMAO19
PD-L1 blockade engages tumor-infiltrating lymphocytes to co-express targetable activating and inhibitory receptors   paper.pdf
Guillaume Beyrend, Esmé T.I. van der Gracht , Ayse Yilmaz, Suzanne van Duikeren, Marcel Camps, Thomas Höllt, Anna Vilanova, Vincent van Unen, Frits Koning, Noel de Miranda, Ramon Arens, Ferry Ossendorp
Journal for ImmunoTherapy of Cancer, Volume 7, Number 217 - 2019
AVHKRM19
Predicting cell types in single cell mass cytometry data   2019_cytofclass.pdf
Tamim Abdelaal, Vincent van Unen, Thomas Höllt, Frits Koning, Marcel Reinders, Ahmed Mahfouz
Cytometry Part A - 2019
 
Publications in 2018
HPVKLV18
CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis   2017_vis_cyteguide_slides.pdf vis2017_hollt_cyteguide.pdf
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Frits Koning, Boudewijn P.F. Lelieveldt, Anna Vilanova
IEEE Transactions on Visualization and Computer Graphics (Proceedings of Information Visualization 2017), Volume 24, Number 1 - jan 2018
LVHTVPEVCLK18
Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine   jem.20171934.full.pdf
Na Li, Vincent van Unen, Thomas Höllt, Allan Thompson, Jeroen van Bergen, Nicola Pezzotti, Elmar Eisemann, Anna Vilanova, Susana M. Chuva de Sousa Lopes, Boudewijn P.F. Lelieveldt, Frits Koning
Journal of Experimental Medicine, Volume 215, Number 3 - 2018
RRVWHKNTVVA18
The contribution of cytomegalovirus infection to immune senescence is set by the infectious dose   fimmu-08-01953.pdf
Anke Redeker, Ester Remmerswaal, Esmé T.I. van der Gracht , Suzanne Welten, Thomas Höllt, Frits Koning, Janko Nikolich-Žugich, Ineke ten Berge, René van Lier, Vincent van Unen, Ramon Arens
Frontiers in Immunology, Volume 8, Number 1953 - 2018
 
Publications in 2017
VHPLREVKL17
Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbour Embedding Reveals Rare Cell Types   2017_hsne_preprint_supplemental.pdf 2018_hsne_biovis.pdf naturecommunications17_Visual_analysis_of_mass_cytometry_data_by_hierarchical_stochastic_neighbour_embedding_reveals_rare_cell_types.pdf
Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel Reinders, Elmar Eisemann, Anna Vilanova, Frits Koning, Boudewijn P.F. Lelieveldt
Nature Communications, Volume 8, Number 1740, page 1--10 - 2017
 
Publications in 2016
HPVKELV16
Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets   eurovis16_Cytosplore_Interactive_Immune_Cell_Phenotyping_for_Large_Single-Cell_Datasets.pdf eurovis16_Cytosplore_Interactive_Immune_Cell_Phenotyping_for_Large_Single-Cell_Datasets_slides.pdf
Thomas Höllt, Nicola Pezzotti, Vincent van Unen, Frits Koning, Elmar Eisemann, Boudewijn P.F. Lelieveldt, Anna Vilanova
Computer Graphics Forum (Proc. of EuroVis), Volume 35, Number 3, page 171--180 - june 2016
VLMMHVVMMVLK16
Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets   1-s2.0-S1074761316301431-main.pdf
Vincent van Unen, Na Li, Ilse Molendijk, Temurhan Mine, Thomas Höllt, Andrea E van der Meulen-de Jong, Hein W Verspaget, M Luisa Mearin, Chris J Mulder, Jeroen van Bergen, Boudewijn P.F. Lelieveldt, Frits Koning
Immunity, Volume 44, Number 5, page 1227--1239 - may 2016

15 publications